Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs111706234 | chr3:136149678 | C/G | 8.19E-5 | 174 | 15.62 | 13.47 | 4 | KM Plot |
| PAAD | rs111709101 | chr21:44066855 | C/T | 1.77E-12 | 172 | 15.48 | 17.03 | 1.37 | KM Plot |
| PAAD | rs111754748 | chr11:125612714 | C/A | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs111754898 | chr2:70490017 | A/AAAAACAAAAC | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs111762699 | chr19:5145220 | A/G | 9.82E-6 | 177 | 15.57 | 15.43 | 3.67 | KM Plot |
| PAAD | rs111784835 | chr7:20644787 | A/T | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs111786773 | chr17:40302476 | A/C | 0.000153 | 177 | 15.57 | 13.8 | 4 | KM Plot |
| PAAD | rs111815290 | chr2:70432689 | C/G | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs111872870 | chr7:20663069 | C/T | 1.43E-6 | 178 | 15.55 | 15.5 | 3.67 | KM Plot |
| PAAD | rs111884310 | chr11:125689381 | G/A | 6.44E-5 | 177 | 15.95 | 11.6 | 4.1 | KM Plot |
| PAAD | rs111888527 | chr3:39120317 | C/A | 0.000149 | 178 | 15.27 | 16.37 | 7.47 | KM Plot |
| PAAD | rs111892045 | chr1:160380465 | T/TAC | 2.77E-12 | 170 | 15.4 | 16.35 | 1.37 | KM Plot |
| PAAD | rs11190858 | chr10:102938188 | A/G | 6.71E-8 | 178 | 15.82 | 14.03 | 3.17 | KM Plot |
| PAAD | rs11190859 | chr10:102938298 | G/C | 5.48E-8 | 177 | 15.77 | 14.03 | 3.17 | KM Plot |
| PAAD | rs11190860 | chr10:102938682 | T/C | 5.48E-8 | 177 | 15.77 | 14.03 | 3.17 | KM Plot |